Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs55937742 chr17:39356225 ATTT/A 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs55978758 chr12:130757971 C/T 0.000111 130 46.77 41.42 20.6 KM Plot
TGCT rs559964 chr3:172419859 A/G 1.67E-5 132 45.83 37.53 24.15 KM Plot
TGCT rs56004802 chr10:1159187 C/T 1.75E-13 133 42.03 47.88 17.1 KM Plot
TGCT rs56036294 chr7:127152275 C/T 1.49E-5 134 42.1 37.53 100.87 KM Plot
TGCT rs56040865 chr7:127152442 C/G 1.49E-5 134 42.1 37.53 100.87 KM Plot
TGCT rs56044825 chr1:42140668 C/T 0 129 41.97 45.1 0.57 KM Plot
TGCT rs56060721 chr7:127148448 A/G 1.49E-5 134 42.1 37.53 100.87 KM Plot
TGCT rs56109239 chr4:154726500 A/G 9.08E-5 133 40.57 46.02 50.9 KM Plot
TGCT rs56162098 chr8:103073020 T/C 0.000112 134 42.18 32.18 48.45 KM Plot
TGCT rs56198877 chr4:154718970 A/G 8.89E-5 134 40.57 49.93 50.9 KM Plot
TGCT rs56207199 chr10:27558415 C/G 6.98E-7 132 42.18 46.3 20.6 KM Plot
TGCT rs56313380 chr10:27558181 C/G 6.98E-7 132 42.18 46.3 20.6 KM Plot
TGCT rs56339806 chr14:78178129 T/C 7.4E-5 134 45.1 39.38 18.07 KM Plot
TGCT rs563846 chr17:39338304 A/C 6.24E-7 134 13.17 46.03 42.18 KM Plot